Mark gerstein yale bioinformatics software

Mark gerstein earned a doctorate in theoretical chemistry and biophysics from cambridge university in 1993. Overview gerstein lab calendars and listings of general yale bioinformatics events these two calendars are primarily for scheduling gerstein lab meetings, but include a number of special events and seminars that may be of general interest to the bioinformatics community at and around yale. Computational biology and bioinformatics software available through keck workstations. Figure1 inspired by successes of the late 20th centuryincluding largescale genomics projects and deepspace missionseveryone in science today seems to extol the virtues of multidisciplinary teamwork.

Department of statistics and data science course list for fall 2019spring 2020 revised. Unless otherwise notated, all the material on this site including lectures, motions database, genome analysis system, and computer code is produced by the gerstein lab at yale university and is mark gerstein, 19972014. Friendly interface to analyse several proteins at the same time synchrotron data collection top of page. Handouts and readings with kate tatham bass 336, 203 4328990. A hitchhikers guide to bioinformatics drexel university info648900200915 a presentation of health informatics group 5 cecilia vernes joel abueg kadodjomon yeo sharon mcdowell hall terrence hughes slideshare. Mark gersteins prgrams to analyse protein geometry swisspdbviewer. As of 2009, he is codirector of the yale computational biology and bioinformatics program, and albert l. Our method naturally weights and combines into reliable predictions genomic features only weakly associated with interaction e. Admission to the ms program and one year of undergraduate courses in biology. Computer science yale university, po box 208285, new haven ct 065208285. Organizational meeting for all spring term courses whose times are not listed below. The scope of this meeting will be the infrastructure, software, and algorithms needed to analyze large data sets in biological research.

Research papers lectures tools people jobs affiliations contact more info. Mark gerstein, phd yale office of cooperative research. Mark gerstein 1 program of computational biology and bioinformatics, 2 department of molecular biophysics and biochemistry and 3 department of computer science, yale university, new haven, ct 06511, usa. A probabilistic method for identifying transcription. Refinement by least squares functionminimization turbofrodo. Mark gerstein williams professor of biomedical informatics, yale full cv as of 1 dec. Mark bender gerstein is an american scientist working in bioinformatics. Gerstein has published appreciably in the scientific literature, with 400 publications in total, including a number of them in prominent venues, such as science, nature, and scientific american. We are pleased to announce the fourth meeting on biological data science, which will begin on wednesday, november 4 at 7. Chronological listing of lab lectures todays lecture more information. Contact us yale computational biology and bioinformatics. Way to list affiliations for mark gerstein on papers. Structured digital literature, a perspective on sharing code and data mark b gerstein yale slides at lectures.

Martin schultz, avi silberschatz, mark gerstein and keihoi cheung. Structured digital literature, a perspective on sharing. Sambath chung, andrew emili, michael snyder, jack f. Mark gerstein from yale university spoke on human genome annotation. Mark gerstein at yale university before starting his lab at dartmouth college in 2012. His laboratory uses computation to annotate genome sequences, mine. A tool for comparing protein abundance and mrna expression data eric z yu 1, anne e counterman burba and mark gerstein1,2,3 address. Williams professor of biomedical informatics program in computational biology and bioinformatics departments of molecular biophysics and biochemistry and of computer science. Pictureidentification software tool for collecting social network data. Mark gerstein bass 432a 266 whitney ave new haven, ct 06511 phone. The symposium was organized in conjunction with the bioinformatics shortcourse. Specialized track in bioinformatics computer science.

Gerstein lab publications main scientific publications. Mark gerstein yale center for research computing yale university. Quantarray software for microarray image analysis is available on one workstation in lh203 and two public workstations in shm ie53. The systematic acquisition of data made possible by genomics and proteomics technologies has created a tremendous gap between available data and their biological interpretation. Welcome yale computational biology and bioinformatics. Friday january 10, 1011 am in 17 hillhouse 3rd floor. Structured digital literature, a perspective on sharing code. Home academics graduate program the master of science specialized track in bioinformatics. He did postdoctoral research in bioinformatics at stanford university from 1993 to 1996. Bioinformatics, systems biology topics of research conference. Senior software developer school of library and information science, indiana university. The database of macromolecular motions is a bioinformatics database and software asaservice tool that attempts to categorize macromolecular motions, sometimes also known as conformational change. Click on the notes tab below to see a transcript of the presentation.

As of 2009, he is codirector of the yale computational biology and bioinformatics program. Williams professor of biomedical informatics at yale university, where he codirects the yale computational biology and bioinformatics program. Data analysis software available through keck workstations. Past contributors include vadim alexandrov,yu brandon xia, ursula lehnert, neil voss, julian graham, michael barnett, haiyuan yu, mickey kataria, and britt park and duncan. Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks koonkiu yana, gang fanga, nitin bhardwaja, roger p.

A flood of data means that many of the challenges in biology are now challenges in computing. Yachen sun, 2014 undergraduate student, currently a software engineer at ixl learning. A summer job is available during the upcoming summer to assist in scientific research at yale university. Hongyu zhao 300 george street, suite 503 new haven, ct 06511 phone. Shaoke lou, 2014 2015 postdoctoral associate, currently a postdoctoral associate in mark gersteins lab at yale university. An important class of proteinprotein interactions are peptide i. Alexandera, and mark gersteinb,a,c,1 bprogram in computational biology and bioinformatics, adepartment of molecular biophysics and biochemistry, and cdepartment of computer science. This course will provide an overview of bioinformatics, the application of computational methods to interpret the.

Gerstein s research is a key example of applying bioinformatics to complex networks involving human processes. Mark gerstein yale school of medicine yale university. Summer jobs and undergraduate research positions gerstein lab. This course will provide an overview of bioinformatics, the application of. Comparing genomes to computer operating systems in terms. Computer science software jiang du, robert d bjornson, zhengdong d zhang, yong kong, michael snyder, mark b gerstein 2009 integrating sequencing technologies in personal genomics. Mark gerstein works in bioinformatics to interpret and annotate genomes. He was named an associate professor in 2001, and the following year became codirector of the yale computational biology and bioinformatics program. Xinmeng jasmine mu is a doctoral student in computational biology and bioinformatics at yale university. Mark gerstein earned a doctorate in theoretical chemistry and biophysics from. Robert heimer professor of epidemiology microbial diseases and of pharmacology director, emerging infections program. Gersteins research is a key example of applying bioinformatics to complex networks involving human processes.